Terminology Service < Semantic Lookup Platform

All terms in DOID

Label	Id	Description
4_methylcytosine	SO_0001919	[A cytosine methylated at the 4 nitrogen.]
tmRNA_encoding	SO_0000659
dispersed_repeat	SO_0000658	[A repeat that is located at dispersed sites in the genome.]
stRNA_encoding	SO_0000656
five_prime_UTR_premature_start_codon_location_variant	SO_0001990	[A 5' UTR variant where a premature start codon is moved.]
5_prime_UTR_premature_start_codon_variant	SO_0001983	[A 5' UTR variant where a premature start codon is introduced, moved or lost.]
mature_transcript	SO_0000233	[A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.]
consensus_AFLP_fragment	SO_0001991	[A consensus AFLP fragment is an AFLP sequence produced from any alignment algorithm which uses assembled multiple AFLP sequences as input.]
rRNA_28S	SO_0000653	[A component of the large ribosomal subunit.]
extended_cis_splice_site	SO_0001993	[Intronic positions associated with cis-splicing. Contains the first and second positions immediately before the exon and the first, second and fifth positions immediately after.]
rRNA_5S	SO_0000652	[5S ribosomal RNA (5S rRNA) is a component of the large ribosomal subunit in both prokaryotes and eukaryotes. In eukaryotes, it is synthesised by RNA polymerase III (the other eukaryotic rRNAs are cleaved from a 45S precursor synthesised by RNA polymerase I). In Xenopus oocytes, it has been shown that fingers 4-7 of the nine-zinc finger transcription factor TFIIIA can bind to the central region of 5S RNA. Thus, in addition to positively regulating 5S rRNA transcription, TFIIIA also stabilizes 5S rRNA until it is required for transcription.]
spliceosomal_intron	SO_0000662	[An intron which is spliced by the spliceosome.]
Okazaki_fragment	SO_0001985	[Any of the DNA segments produced by discontinuous synthesis of the lagging strand during DNA replication.]
upstream_transcript_variant	SO_0001986	[A feature variant, where the alteration occurs upstream of the transcript TSS.]
downstream_transcript_variant	SO_0001987
5_prime_UTR_premature_start_codon_gain_variant	SO_0001988	[A 5' UTR variant where a premature start codon is gained.]
5_prime_UTR_premature_start_codon_loss_variant	SO_0001989	[A 5' UTR variant where a premature start codon is lost.]
miRNA_primary_transcript	SO_0000647	[A primary transcript encoding a micro RNA.]
siRNA	SO_0000646	[A small RNA molecule that is the product of a longer exogenous or endogenous dsRNA, which is either a bimolecular duplex or very long hairpin, processed (via the Dicer pathway) such that numerous siRNAs accumulate from both strands of the dsRNA. SRNAs trigger the cleavage of their target molecules.]
antisense_primary_transcript	SO_0000645	[The reverse complement of the primary transcript.]