Terminology Service < Semantic Lookup Platform

All terms in EFO

Label	Id	Description
blood cell	CL_0000081	[A cell found predominately in the blood.]
basophil	CL_0000767	[Any of the immature or mature forms of a granular leukocyte that in its mature form has an irregularly shaped, pale-staining nucleus that is partially constricted into two lobes, and with cytoplasm that contains coarse, bluish-black granules of variable size. Basophils contain vasoactive amines such as histamine and serotonin, which are released on appropriate stimulation. A basophil is CD123-positive, CD193-positive, CD203c-positive, and FceRIa-positive.]
monocyte count	EFO_0005091	[quantification of monocytes in the blood]
leukocyte count	EFO_0004308	[The number of WHITE BLOOD CELLS per unit volume in venous BLOOD. A differential leukocyte count measures the relative numbers of the different types of white cells.]
snmC-Seq2	EFO_0030027	[A protocol for single nucleus methylcytosine sequencing. snmC-seq2 provides improved read mapping, reduced artifactual reads, enhanced throughput, as well as increased library complexity and coverage uniformity compared to snmC-seq.]
sci-RNA-seq3	EFO_0030028	[Single-cell combinatorial indexing (‘sci-’) is a methodological framework that employs split-pool barcoding to uniquely label the nucleic acid contents of large numbers of single cells or nuclei. The sci-RNA-seq3 is an updated version of sci-RNA-seq. The major improvements are: (1) nuclei are extracted directly from fresh tissues without enzymatic treatment; (2) hairpin ligation for the third level indexing (barcoded Tn5 tagmentation was used in the previous version); (3) individually optimised enzymatic reactions; (4) FACS was replaced by dilution, and sonication and filtration steps were added to minimize aggregation.]
P wave duration	EFO_0005094	[measurement of the time from start to finish of the P wave, in the electrocardiograph illustrating the initial deflection of the cardiac cycle, representing the excitation of the atria.]
sulfasalazine	CHEBI_9334
PR segment	EFO_0005095	[measurement of the interval from the offset of the P wave to the onset of the QRS wave complex]
entorhinal cortical volume	EFO_0005092	[quantification of the volume of the entorhinal cortex]
hip circumference	EFO_0005093	[circumferential measurement of the largest part of the hip]
B6.SJL-Slc6a3tm1.1(cre)Bkmn/J	EFO_0030032	[DATIREScre knock-in mice have Cre recombinase expression directed to dopaminergic neurons, without disrupting endogenous dopamine transporter expression. These mice may be useful for studying gene function in dopaminergic neurons, such as drug addiction, Parkinson's disease and Attention Deficit-Hyperactivity Disorder (ADHD).]
obsolete_cortical collecting duct	EFO_0005098	[The cortical collecting duct is the portion of the collecting duct that resides in the renal cortex]
gRNA-seq	EFO_0030033
obsolete_stele	EFO_0005099	[A cardinal organ part that is the central column of a plant axis that consists of the primary vascular tissue and associated ground tissue.]
Quant-seq	EFO_0030030	[QuantSeq provides an easy protocol to generate highly strand-specific next-generation sequencing (NGS) libraries close to the 3′ end of polyadenylated RNAs within 4.5 h.]
obsolete_abdominal wall	EFO_0005096
phlegm	UBERON_0016552	[Mucus produced in the respiratory tract.]
SCOPE-chip	EFO_0030031	[The SCOPE-chip captures single cells by partitioning them into hundreds of thousands of microwells on the chip following the Poisson distribution. Afterwards, an excess of Barcoding Beads is added to the microwells of the chip; the diameter of the beads versus that of the microwells ensuring that only one Barcoding Bead falls into each microwell. After cell lysis, Barcoding Beads, each with a unique cell label (Barcode), capture mRNA by binding to the poly (A) tail. Barcoding Beads are subsequently collected from the microwell chip, followed by reverse transcription of the mRNA captured by the Barcoding Beads into cDNA, and subsequent PCR amplification. The amplified cDNA is then fragmented and ligated with sequencing adapters. The end result is an NGS library that is compatible with Illumina sequencing instruments, that can also be run on Pacbio and MGI sequencing platforms with minor modifications.]
obsolete_bronchiole	EFO_0005097