Terminology Service < Semantic Lookup Platform

All terms in EFO

Label	Id	Description
ampulla of vater neoplasm	MONDO_0000921	[A benign or malignant neoplasm involving the ampulla of Vater.]
malignant tumor of extrahepatic bile duct	MONDO_0021321	[A cancer that involves the extrahepatic bile duct.]
PhenoCycler-Fusion	EFO_0700001	[A spatial discovery system where whole-slide staining of tissues using pre-designed or custom antibody panels are imaged through automated fluidics (PhenoCycler) and high-speed image acquisition (PhenoImager).]
ExSeq	EFO_0700006	[A spatial transcriptomics assay that involves physically expanding specimens with polymer- and hydrogel-based systems followed by in situ sequencing.]
in situ sequencing	EFO_0008989	[In situ sequencing is a method for parallel targeted analysis of short RNA fragments in morphologically preserved cells and tissue. The method is based on padlock probing, rolling-circle amplification (RCA) and sequencing-by-ligation chemistry]
targeted ExSeq	EFO_0700007	[A spatial transcriptomics assay that involves physically expanding specimens with polymer- and hydrogel-based systems followed by targeted padlock probe hybridization, amplification, and in situ sequencing of padlock barcode.]
BD Rhapsody Targeted mRNA	EFO_0700004	[A BD Biosciences-based technology that utilizes multiplex PCR to sequence mRNA from the 3' end of specific genes from a predetermined panel.]
Abseq	EFO_0700005	[A method that uses DNA-tagged antibodies to quantify proteins in single cells.]
intestinal infectious disease	MONDO_0000916	[An infectious disease involving a pathogenic inflammatory response in the intestinal mucosa.]
copy-neutral loss of heterozygosity	EFO_0030065	[Assessment of copy-neutral loss of heterozygosity.]
regional base ploidy	EFO_0030064	[Copy number assessment of regional base ploidy.]
relative copy number variation	EFO_0030066	[Assessment of relative copy number variation.]
copy number assessment	EFO_0030063	[Result of genomic copy number assessment of a genomic element or region.]
Pasteurella multocida	NCBITaxon_747
Lake Victoria marburgvirus - Angola2005	NCBITaxon_378830
complete genomic deletion	EFO_0030069	[Assessment of complete genomic deletion.]
copy number loss	EFO_0030067	[Assessment of genomic copy number loss.]
low-level copy number loss	EFO_0030068	[Assessment of low-level genomic copy number loss.]
untargeted ExSeq	EFO_0700008	[A spatial transcriptomics assay that involves physically expanding specimens with polymer- and hydrogel-based systems followed by reverse transcription, amplification, and in situ sequencing of untargeted RNA using FISSEQ.]
FISSEQ	EFO_0008990	[genome-wide profiling of gene expression in situ in fixed cells and tissues, in which RNA is converted into cross-linked cDNA amplicons and sequenced manually on a confocal microscope]