Terminology Service < Semantic Lookup Platform

All terms in EFO

Label	Id	Description
STARmap	EFO_0030000	[STARmap is an image-based technology for 3D intact-tissue RNA sequencing, which integrates hydrogel-tissue chemistry, targeted signal amplification, and in situ sequencing.]
erythrocyte measurement	EFO_0005047	[Is a quantification of some aspect of erythrocyte function, quantity, or composition.]
10x transcription profiling	EFO_0030080	[The 10x-based single-cell technology that sequences mRNA molecules.]
visceral Leishmaniasis	EFO_0005045	[A severe form of leishmaniasis characterized by irregular bouts of fever, substantial weight loss, swelling of the spleen and liver, and anaemia (which may be serious). If left untreated it may lead to death. Two species of Leishmania are known to give rise to the visceral form of the disease. The species commonly found in East Africa and the Indian subcontinent is L. donovani and the species found in Europe, North Africa, and Latin America is L. infantum, also known as L. chagasi., Is a parasitic infection caused by protozoan parasites of the Leishmania genus. The parasites migrate to internal organs causing a severe form of the disease.]
sci-CAR	EFO_0030001	[A combinatorial indexing-based coassay that jointly profiles chromatin accessibility and mRNA (CAR) in each of thousands of single cells, combining sci–ATAC sequencing (sci-ATAC-seq) and sci-RNA-seq into a single protocol.]
scATAC-seq (cell index)	EFO_0008925	[A single cell ATAC-seq method for multiplex profiling of chromatin accessibility by combinatorial cellular indexing. Single nuclei are identified by the unique combination of n5 barcodes and indices rather than by isolation.]
cutaneous Leishmaniasis	EFO_0005046	[Leishmaniasis affecting the skin. It is the most common form of leishmaniasis. It presents with erythematous macules and papules, and nodules which may eventually ulcerate. The lesions appear in the bite site in the exposed skin areas., Is a parasitic infection of the skin caused by the Leishmania protozoan parasite]
microwell-seq	EFO_0030002	[A platform for high-throughput single-cell RNA-sequencing. An agarose plate with microwells is used to trap 5-10K individual cells. Barcoded magnetic beads are loaded and trapped into each well. Each single bead is conjugated with 107–108 oligonucleotides, which share the same cellular barcode. Each oligonucleotide consists of a primer sequence, a cell barcode, a unique molecular identifier (UMI), and a poly T tail. After incubation of beads and cells in a soft flow of lysis buffer, beads with captured mRNA are retrieved with a magnet. Beads are collected in a tube in which reverse transcription and template switch steps are performed using the Smart-seq2 protocol (Picelli et al., 2013). Amplified cDNA is fragmented by a customized transposase that carries two identical insertion sequences. The 3′ ends of the transcripts are then enriched during library generation using PCR and sequenced using an Illumina Sequencing Platform.]
obsolete_D,L-2-hydroxyglutaric aciduria	Orphanet_356978
protein 4.1 measurement	EFO_0020666	[The determination of the amount of protein 4.1 in a sample]
protein amnionless measurement	EFO_0020667	[The determination of the amount of protein amnionless in a sample]
protein disulfide-isomerase a3 measurement	EFO_0020668	[The determination of the amount of protein disulfide-isomerase a3 in a sample]
protein disulfide-isomerase measurement	EFO_0020669	[The determination of the amount of protein disulfide-isomerase in a sample]
proteasome activator complex subunit 3 measurement	EFO_0020662	[The determination of the amount of proteasome activator complex subunit 3 in a sample]
proteasome subunit alpha type-1 measurement	EFO_0020663	[The determination of the amount of proteasome subunit alpha type-1 in a sample]
proteasome subunit alpha type-2 measurement	EFO_0020664	[The determination of the amount of proteasome subunit alpha type-2 in a sample]
proteasome subunit alpha type-6 measurement	EFO_0020665	[The determination of the amount of proteasome subunit alpha type-6 in a sample]
sphingomyelin d18:1/16:1	CHEBI_106363	[A sphingomyelin d18:1 in which the fatty acyl group contains 16 carbons and 1 double bond]
prostate-specific antigen measurement	EFO_0020660	[The determination of the amount of prostate-specific antigen in a sample]
proteasome activator complex subunit 1 measurement	EFO_0020661	[The determination of the amount of proteasome activator complex subunit 1 in a sample]