Terminology Service < Semantic Lookup Platform

All terms in ONE

Label	Id	Description
sequence assembly process	OBI_0001872	[A data transformation that assembles two or more individual sequence reads into contiguous sequences (i.e., contigs).]
N50	OBI_0001940	[the weighted median item size or N50 is a weighted median of the lengths of items, equal to the length of the longest item i such that the sum of the lengths of items greater than or equal in length to i is greater than or equal to half the length of all of the items. With regard to assemblies the items are typically contigs or scaffolds. It therefore denotes the ability of the software to create contigs and provides information about the resulting sequence assembly]
genome coverage	OBI_0001939	[A data item that is the total number of bases in reads, divided by genome size, assumed to be the reference size (for instance of 3.10 Gb for human and 2.73 Gb for mouse) and refers to the percentage of the genome that is contained in the assembly based on size estimates; these are usually based on cytological techniques. Genome coverage of 90–95% is generally considered to be good, as most genomes contain a considerable fraction of repetitive regions that are difficult to sequence. So it is not a cause for concern if the genome coverage of an assembly is a bit less than 100%.]
number of errors	OBI_0001873	[a data item that is the number of times that a given process failed, as an integer]
random access memory size	OBI_0001874	[random access memory size is a scalar measurement datum which denotes the amount of physical memory know as random access memory present of a computer or required by a computational process or data transformation]
cultured immune cell population	OBI_0001875	[a cultured cell population comprised of a single type of immune system cell]
cell culture	OBI_0001876	[A material entity comprised of cultured cells and the media in which they are being propagated or stored.]
random access memory	OBI_0001877	[Random-access memory (RAM) is a form of computer data storage. A random-access device allows stored data to be accessed directly in any random order. In contrast, other data storage media such as hard disks, CDs, DVDs and magnetic tape, as well as early primary memory types such as drum memory, read and write data only in a predetermined order, consecutively, because of mechanical design limitations. Therefore, the time to access a given data location varies significantly depending on its physical location]
material information bearer	IAO_0000178	[A material entity in which a concretization of an information content entity inheres.]
establishing primary cell culture	OBI_0001878	[an establishing cell culture process whereby cells explanted directly from an organismal source or specimen, and placed in culture for maintenance or propagation as a primary cell culture]
primary cultured cell population	OBI_0100061	[A cultured cell population comprised of cells expanded directly from living tissue prior to being passaged. ]
evaporative light scattering detector	OBI_0000547	[The evaporative light scattering detector, as its name implies, utilizes a spray that continuously atomizes the column eluent into small droplets. These droplets are allowed to evaporate, leaving the solutes as fine particulate matter suspended in the atomizing gas.]
capillary pump system	OBI_0000546	[A pump system optimized for capillary chromatography.]
column compartment	OBI_0000545	[For chromatography analyses, the ability to maintain a stable column environment regardless of ambient temperature fluctuations is critical for maintaining retention time precision. In order to ensure such stable conditions at different chromatography steps a column compartment can be installed that ensures e.g. stable temperature of the column in a given step.]
Bruker SampleRail system	OBI_0000544	[This Instrument system automatically prepares an NMR sample, inserts it into an NMR magnet, performs NMR experiments on the sample, and transports it back to the preparation system. The SampleRail fulfills the transporting tasks from the preparation system into the NMR magnet and back.]
syringe filter	OBI_0000543	[A small membrane filter of defined pore size, that filters samples from a syringe.]
mature NK T cell	CL_0000814	[A mature alpha-beta T cell of a distinct lineage that bears natural killer markers and a T cell receptor specific for a limited set of ligands. NK T cells have activation and regulatory roles particularly early in an immune response.]
Bruker AC series NMR instrument	OBI_0000541	[A series of older Bruker NMR magnets, now out of production.]
isolation of adherent cells	OBI_0000540	[a material separation process in which cells that stick to the container in which they are grown as a cell culture are separated from those in the liquid component of the culture. The output of this process are adherent cells.]
membrane-bounded organelle	GO_0043227	[Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.]