Terminology Service < Semantic Lookup Platform

All terms in ONE

Label	Id	Description
cell culture expansion	OBI_0001147	[a process that results in the increase of cell numbers]
sequence read length measurement datum	OBI_0002479	[A measurement datum that is the result of the measurement of the number of bases in a DNA or RNA sequence.]
gene knock out	OBI_0001148	[a genetic transformation that renders a gene non-functional, e.g. due to a point mutation, or the removal of all, or part of, the gene using recombinant methods.]
gene knock in	OBI_0001149	[a genetic transformation that involves the insertion of a protein coding cDNA sequence at a particular locus in an organism's chromosome. Typically, this is done in mice since the technology for this process is more refined, and because mouse embryonic stem cells are easily manipulated. The difference between knock-in technology and transgenic technology is that a knock-in involves a gene inserted into a specific locus, and is a "targeted" insertion.]
bcl2fastq software application	OBI_0002470	[A base calling application that implments a base calling algorithm to convert BCL (binary base call) files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis.]
date process started	OBI_0002471	[A data item that is the date when a process was initiated.]
spike-in quality control role	OBI_0001140	[a reference substance role that is borne by a material entity with a known amount which is mixed into the evaluant of assays for quality control or data normalization purposes]
dbGaP study identifier	OBI_0002472	[A central registered identifier symbol that denotes a specific study in dbGaP.]
individual organism identifier	OBI_0001141	[a CRID symbol used to distinguish one individual organism from another.]
material amplification role	OBI_0002473	[A worker role played by the person who runs the enzymatic amplifying process.]
dye swap quality control role	OBI_0001142	[a reference substance role that is borne by a material entity used in a dye swap design experiment for quality control or data normalization purposes]
material sequencing library preparation role	OBI_0002474	[A worker role played by the person who performs the library preparation process to generate a sequencing library for a sample to be sequenced.]
labeled specimen	OBI_0000924	[A specimen that has been modified in order to be able to detect it in future experiments]
number of PCR cycles during library construction	OBI_0002475	[A data item that is the number of PCR cycles used during the construction of a sequencing library.]
light microscopy	CHMO_0000102	[Microscopy where the specimen is illuminated with visible light and a system of lenses is used to produce an image.]
contig	SO_0000149	[A contiguous sequence derived from sequence assembly. Has no gaps, but may contain N's from unavailable bases.]
sequence_assembly	SO_0000353	[A sequence of nucleotides that has been algorithmically derived from an alignment of two or more different sequences.]
supercontig	SO_0000148	[One or more contigs that have been ordered and oriented using end-read information. Contains gaps that are filled with N's.]
microraft	OBI_0002487	[A material separation device also commerically known as Isoraft, that is used to isolate single cells.]
age since planting measurement datum	OBI_0001156	[An age measurement datum that is the result of the measurement of the age of an organism since planting, the process of placing a plant in media (e.g. soil) to allow it to grow, which excludes sowing.]