Terminology Service < Semantic Lookup Platform

All terms in ONE

Label	Id	Description
agarose gel electrophoresis system	OBI_0001134	[A gel electrophoresis system that is used to separate DNA or RNA molecules by size, achieved by moving negatively charged nucleic acid molecules through an agarose matrix with an electric field.]
alignment counting algorithm	OBI_0002466	[An algorithm used to assign aligned sequence reads, resulting from a reference genome transcriptome alignment algorithm, to sequence features (e.g. genes or transcripts).]
alignment counting application	OBI_0002467	[A software application that implements an alignment counting algorithm, used to count the overlap of aligned sequencing reads with genes.]
base calling algorithm	OBI_0002468	[An algorithm that assigns nucleotides to temporal or spatial peaks generated by a detector, such as peaks of light intensities generated by a DNA sequencer]
protein sequencer	OBI_0001137	[An device that is used to determine the order of amino acids in protein sequences.]
base calling application	OBI_0002469	[A base-calling application that implments a base-calling algorithm to convert BCL (binary base call) files, (e.g., those generated by Illumina sequencing systems) to standard FASTQ file formats for downstream analysis.]
X-ray source	OBI_0001138	[A device that is used to generate X-rays.]
defined population inclusion criterion	OBI_0002460	[An inclusion criterion that is based on fitting within the defined characteristics of a population based study design.]
BCL format	OBI_0002461	[A data format specification that is a binary file containing base calling data. These files are created by sequencing machines during the act of sequencing, and contain data about each of the nucleotide clusters on a sequencing flow cell.]
data format specification	IAO_0000098	[A data format specification is the information content borne by the document published defining the specification. Example: The ISO document specifying what encompasses an XML document; The instructions in a XSD file]
vacuum oven	OBI_0001130	[A device that heats materials in a vacuum.]
ERCC RNA spike-in	OBI_0002462	[A processed material developed by the External RNA Controls Consortium (ERCC) that consists of 92 transcripts, derived and traceable from NIST-certified DNA plasmids.]
slide warmer	OBI_0001131	[A device that is used to heat microscope slides.]
SIRV RNA spike-in	OBI_0002463	[A processed material that consists of transcript isoforms of 7 spike-in RNA variant (SIRV) genes and possibly the 92 External RNA Controls Consortium (ERCC) RNA spike-in genes.]
capillary electrophoresis instrument	OBI_0001132	[An electrophoresis system that is used to separate ionic species by their charge and frictional forces and mass.]
SRS identifier	OBI_0002464	[An accession number that applies to a database record for an individual sample object in an NCBI Sequence Read Archive (SRA) submission. These records are imported from the NCBI BioSample database.]
denaturing high-performance liquid chromatography instrument	OBI_0001133	[A high performance liquid chromatography instrument that employs temperature-dependent separation of DNA containing mismatched base pairs from PCR-amplified DNA fragments for chromatographic mutation analysis.]
number of rounds of amplification	OBI_0002476	[A data item that is the number of times an amplification reaction happened.]
reference genome role	OBI_0002477	[A reference substance role that is played by a reference genome when used during sequence alignment.]
reference genome-transcriptome alignment algorithm	OBI_0002478	[An algorithm that attempts to align a nucleic acid sequence to a reference genome and transcriptome.]